Using HyperDia how to avoid trains UNcovered by JRPass?

I have JRPass and tried to use Hyperdia in order to plan itinerary. How can I make sure Hyperdia gives me trains covered by JRPass?

I click "Detail" and then I have to check/uncheck boxes, which of these should be unchecked:

1. Airplane - obviously unchecked
2. Airport bus - unchecked
3. Shinkansen (bullet) (only NOZOMI, HAYABUSA, MIZUHO) - unchecked
4. Shinkansen (bullet) (except NOZOMI, HAYABUSA, MIZUHO) - checked
5. Limited Express - checked
6. Express - checked
7. Liner - checked
8. Walk - checked (I know it is not a train)
9. Sleeper L. Express - checked
10. Sleeper Express - checked
11. Local - checked
12. Japan Railway (JR) - checked
13. Provate Railway - unchecked.

So, if I press "Search" with these conditions - can I be sure I will not pay any additional fee if stick to the plan proposed by Hyperdia?