Prizes in hyperdia

Hi,

I will visit to japan and use JR pass but I still don't understand when i read from hyperdia if there is shown another colour train for example when i plan trip from haneda airport terminal 1 to tennoji osaka, there is shown some route with tokyo monorail local and keikyu airport exp with colour of the train is pink so my question is am i must pay more for this? because i have explained from my agent where i buy JR Pass in Indonesia they say that if the symbol train colour is pink it is not cover only colour green covered with JR Pass.
Meanwhile I ever read from some another information that all train shown in hyperdia is cover by Jr Pass included monorail.

Regards

Arief