Japan this Dec16-Jan1

Hello Daniel-san,

First of all, this is truly amazing service you're doing for us travelers. Thank you.

For me and my family's itinerary this coming Dec16, of course I would like to figure out if it makes sense to use the JR pass with 4 adults and 1 child (7yo) for a 16day stay. Initial visit to Hyperdia from Narita2 to Shijo stop in Kyoto does not show any JR pass options already (After removing - airplanes, private and the really fast shinkansen). Below are our plans, mostly one area per day:
- Dec16: Narita to Kyoto (Shijo Station) - Dec17-Dec23: Arashiyama park, Nishiki Market, Kiyomizu-Dera, Gion, Kyoto Railway museum, Fushimi-Inari, Iga-Ryu...
- Dec23: Kyoto to Tokyo - Dec24-Dec31: Tokyo Met building, Odabia area, Mount Fuji Tour, Ueno Park, Tsukiji, Ginza, Old Edo, Asakusa area...
- Jan1: Tokyo to Narita

Initial research using Google maps shows that the pricing are close. What I would like to know is, "Can we use the JR pass to go to all the areas we're planning to visit?"

Regards and more power to you,
Dennis