Hi,
I would appreciate any assistance.
Our major travel doesn't fit neatly within the seven days.
From the little I have read we will still need to purchase subway tickets in Tokyo, the Free pass in Hakone and other train/bus tickets in Kyoto.
Day 1 arrive Haneda Airport travel to Shinjuku
Day 2 - 3Tokyo
Day 4 travel to Kyoto
Day 5-8 Kyoto
Day 9 travel to Hakone
Day 10 Hakone
Day 11 travel to Asakusa
Day 12-15 Tokyo + day trip Yokohama
Day 16 return Haneda Airport